Saturday, December 20, 2008

Software for NMR Concepts

Software for NMR Concepts

Link - http://science.widener.edu/svb/nmr/nmr.html

"This is an outline of a lecture given for NSF Faculty Enhancement Workshops at the University of Rhode Island and for NMR Concepts.A series of exercises designed to show features of each program is available. Topics are selected from the outline below for a particular audience. Additional information about this software is available from this site.

  1. Where to get this file and more information: http://science.widener.edu/svb/nmr/nmr.html

  2. System Requirements: Most of the software discussed here will run on a 486 25 SX, but a 486 33 DX with 8 MB RAM is recommended as a minimal system. Because I use a PC, this listing does not include Macintosh applications. Some of the commercial applications are available for the Macintosh. Windows 95 versions are also available for some of the commercial applications."[1]
1.http://science.widener.edu/svb/nmr/nmr.html


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Monday, December 1, 2008

Chemistry of Biomolecules

Crystal structure of shikimate kinase. (Image courtesy of the
  RCSB PDB. PDB ID: 1VIA. Badger, J., et al. "Structural 
analysis of a set of proteins resulting from a bacterial 
genomics project." Proteins 60 (2005): 787-796.)
Chemistry of Biomolecules
Prof. Sarah O'Connor (MIT), PDF Format
Graduate course for chemistry students

Link -
http://ocw.mit.edu/OcwWeb/Chemistry/5-451Fall-2005/LectureNotes/index.htm

Course Highlights
Natural product biosynthesis, Polyketide biosynthesis, Saccharide biosynthesis, Shikimate pathway, Shikimate pathway flavonoids, Alkaloid biosynthesis, Tyrosine derivatives, Terpene biosynthesis.

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Organometallic Chemistry


Organometallic Chemistry
Prof. Gregory Fu (MIT), PDF Format
Graduate course for chemistry students

Link - http://ocw.mit.edu/OcwWeb/Chemistry/5-44Fall-2004/DownloadthisCourse/index.htm

"Course Description
This course examines important transformations of organotransition-metal species with an emphasis on basic mechanisms, structure-reactivity relationships, and applications in organic synthesis"[1].
Introduction, Structure and Bonding, Reactivity, Applications in Organic Chemistry
1.http://ocw.mit.edu/OcwWeb/Chemistry/5-44Fall-2004/CourseHome/index.htm

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Physical Methods in Inorganic Chemistry

Molecular model of the amino acid tyrosine with experimental electron density in front
 of an X-ray diffractometer at MIT. The tyrosine is part of the crystal structure
 of phosphoglycerate mutase from M. tuberculosis. See P. Mueller et al. (2005). Acta Cryst. D61, 309-315. 

Physical Methods in Inorganic Chemistry
Dr. Peter Mueller(MIT), PDF format
Graduate course for chemistry students

Link -
http://ocw.mit.edu/OcwWeb/Chemistry/5-068Spring-2005/LectureNotes/index.htm

"Course Description
This course covers the following topics: X-ray diffraction: symmetry, space groups, geometry of diffraction, structure factors, phase problem, direct methods, Patterson methods, electron density maps, structure refinement, how to grow good crystals, powder methods, limits of X-ray diffraction methods, and structure data bases"[1].
1.http://ocw.mit.edu/OcwWeb/Chemistry/5-068Spring-2005/CourseHome/index.htm

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Crystal Structure Refinement


The platform geometry. (Image by Dr. Peter Mueller.)
http://ocw.mit.edu/OcwWeb/Chemistry/5-067Fall-2007/CourseHome/index.htm

Crystal Structure Refinement
Dr. Peter Mueller (MIT), PDF Format
Graduate course for chemistry students

Link -
http://ocw.mit.edu/OcwWeb/Chemistry/5-067Fall-2007/LectureNotes/index.htm

"Course Description
From crystal to diffraction pattern, The SHELX package, Hydrogen atom, Disorder, Twinning, Artefacts
This course in crystal structure refinement examines the practical aspects of crystal structure determination from data collection strategies to data reduction and basic and advanced refinement problems of organic and inorganic molecules"[1].
1.http://ocw.mit.edu/OcwWeb/Chemistry/5-067Fall-2007/CourseHome/index.htm


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Principles of Inorganic Chemistry

Illustration of phosphinocarbene. (Figure by Prof. Christopher Cummins.)
http://ocw.mit.edu/OcwWeb/Chemistry/5-05Spring-2005/CourseHome/index.htm
Principles of Inorganic Chemistry
Prof. Christopher Cummins ( MIT) , PDF Format
Graduate course for chemistry students


Link -
http://ocw.mit.edu/OcwWeb/Chemistry/5-05Spring-2005/LectureNotes/index.htm

Introduction, Aluminum Chemistry, Aluminum II, Phosphorus, Gallium and Indium, Gallium Multiple bonds, Gallium, Phosphorus and Tin, Nitrogen , Halogen , Noble Gases, Fluorine , Krypton , Relative Effects, Gold, Xenon

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Sunday, November 30, 2008

Bioinorganic Chemistry

Bioinorganic Chemistry
Bertini, Ivano and Gray, Harry B. , PDF Format
Graduate course for chemistry students


This book covers material that could be included in a one-quarter or one-semester course in bioinorganic chemistry for graduate students and advanced undergraduate students in chemistry or biochemistry. We believe that such a course should provide students with the background required to follow the research literature in the field. The topics were chosen to represent those areas of bioinorganic chemistry that are mature enough for textbook presentation. Although each chapter presents material at a more advanced level than that of bioinorganic textbooks published previously, the chapters are not specialized review articles. What we have attempted to do in each chapter is to teach the underlying principles of bioinorganic chemistry as well as outlining the state of knowledge in selected areas. We have chosen not to include abbreviated summaries of the inorganic chemistry, biochemistry, and spectroscopy that students may need as background in order to master the material presented. We instead assume that the instructor using this book will assign reading from relevant sources that is appropriate to the background of the students taking the course. For the convenience of the instructors, students, and other readers of this book, we have included an appendix that lists references to reviews of the research literature that we have found to be particularly useful in our courses on bioinorganic chemistry.

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Spectroscopy

Spectroscopy
Dr.Geoffrey A. Blake ,PDF Format
Graduate course for chemistry students


Time-independent perturbation theory, time-dependent perturbation theory; Spectroscopic lineshapes, overview of molecular eigenstates & molecular rotational spectra; Rotation of asymmetric tops, Diatomic rovibrational spectroscopy; Group theory in polyatomic rovibrational and Raman spectroscopy; Local mode theory/vibrations of functional groups, Vibrational spectroscopy of solids; lectronic spectroscopy and Franck-Condon factors, Photochemistry, Electronic spectroscopy of polyatomic; Non-radiative processes in polyatomics, Photoelectron spectroscopy, begin NMR; Conclude NMR (including FT-NMR and MRI), ESR (EPR); Statistical Thermodynamics - Boltzmann Law, Molecular/Ensemble Partition Functions and Thermodynamics; Statistical Thermodynamics/Thermodynamic Properties of Ideal Gases & Crystalline Solids.

This is only a small part of our online resources. To see them all just visit our main blog

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Quantum Mechanics and Spectroscopy

Quantum Mechanics and Spectroscopy
M. Kuno,University of Notre Dame , PDF Format
Undergraduate course for chemistry students


Good course cover basic graduate level , more than 20 topics in this book
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Thermodyanmics, kinetics, and statistical mechanics

Thermodyanmics, kinetics, and statistical mechanics
M. Kuno,University of Notre Dame , PDF Format
Undergraduate course for chemistry students


All undergraduate level topics in physical chemistry 

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Nanoscience and Nanotechnology

Nanoscience and Nanotechnology
M. Kuno,University of Notre Dame , PDF Format
Graduate course for chemistry students



Introduction, Structure, Length scale, Exciton, Quantum mechanics review, Confinement, Non degenerate perturbation theory, Density of state, More density of states, Even more density of states, Joint density of state, Absorption, Interband transition, Emission, Bands.

This is only a small part of our online resources. To see them all just visit our main blog

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Molecular spectroscopy

Molecular spectroscopy
M. Kuno,University of Notre Dame , PDF Format
Graduate course for chemistry students

Links - http://nd.edu/~mkuno/Class_downloads/Chem90652_spect_text.pdf


Vectors, Vector calculus and electrostatistic, Maxwell equation and waves, Calassic light interactions, Electrical properties, Optical constants, Kramers Kronig Relations, Lorentz model, Drude Lorentz model.

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Spectroscopy of Conjugated Polymers

Spectroscopy of Conjugated Polymers
Graduate course for chemistry students


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Environmental Chemistry

Environmental Chemistry
Dr.Richard Foust, html format


"Environmental Chemistry (CHM 440/ENV 430) offers a rigorous introduction to the chemical principles that govern the reactions, transport, effects and fates of chemical species in water, soil, air and living environments. We will pay special consideration to the effects of technology and man's activities on the chemical composition and properties of the natural environment, and discuss policy issues as they relate to chemical processes"[1].
1.http://jan.ucc.nau.edu/~doetqp-p/courses/env440/env440_2/Syllabus/env440syllabus.html

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Chemical Kinetics online Courses

Applied Chemical Kinetics
Dr.Mark T. Swihart, PDF format

Link - http://www.eng.buffalo.edu/Courses/ce561/LecNotes.html

'This course will provide an overview of applied chemical kinetics and reaction engineering at an intermediate to advanced level. Coverage will be relatively broad and shallow. The goal is to provide students with the vocabulary, modeling tools, and theoretical background to understand current chemical kinetics and reaction engineering literature and to tackle the sort of complex problems that they will encounter in their dissertation research and beyond'[1].
1.http://www.eng.buffalo.edu/Courses/ce561/CourseInfo.html

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world of chemistry for all

This is only a small part of our online resources. To see them all just visit our main blog